Links

These are useful links for the miRNA community.

miRNA Databases

• miRBase
• miRGeneDB

FANTOM5

• Cell miRNA Expression and promoter viewer

UCSC related miRNA Tracks

• pri-miRNA Assemblies
• Cellular microRNA Expression

small RNA-seq miRNA Aligners

• Chimira (web-based)
• miRge2.0 (locally-based)

miRNA Target Database

• Diana TarBase v7.0

Publicly available miRNA Expression data

• Sequence Read Archive
• Gene Expression Omnibus

 

Do you have a useful microRNA-related link?  Contact Marc Halushka (mhalush1@jhmi.edu) to have it added here.